there was nothing wrong with your posted code, it produces
<?xml version="1.0" encoding="utf-8"?><mml:start
xmlns:mml="http://www.w3.org/1998/Math/MathML"; attr="myattr">
<mml:two>
<mml:three>3</mml:three>
<mml:four>4</mml:four>
</mml:two>
</mml:start>
maybe you have a problem with the xalan implementation?
David
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