Can someone please tell me how I can give elements of a subtree that are
copied to the output with <xsl:copy-of select="."> a new namespace?
you can't, changing the namespace is changing the name so you can't copy
replace
<xsl:copy-of select=".">
by
<xsl:spply-templates mode="newns" select="."/>
together with a mode that changes namespace of every element in the
subtree:
<xsl:template match="*">
<xsl:element name="{local-name()}" namespace="http://your.new.ns";>
<xsl:copy-of select="@*"/>
<xsl:spply-templates mode="newns"/>
</xsl:element>
</xsl:template>
David
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